Full information on isolate SRR1646145 (id:10400)

Provenance/primary metadata

id
10400
isolate
SRR1646145
alias
H122920486
subspecies
enterica
serovar
Java
year
2012
source
clinical
detailed source
Human
ENA accession
SRR1646145 www.ebi.ac.uk
rMLST database accession
112465
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
16 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
135
total length
4,718,689 bp
max length
229,026 bp
mean length
34,954 bp
N50 contig number
18
N50 length (L50)
88,004
N90 contig number
58
N90 length (L90)
26,262
N95 contig number
69
N95 length (L95)
16,876
loci tagged
6,546

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 241 (7 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 325 (7 isolates)

Schemes and loci

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Tools

Analysis: