Full information on isolate SRR1646118 (id:10378)

Provenance/primary metadata

id
10378
isolate
SRR1646118
alias
H123060338
subspecies
enterica
serovar
Java
year
2012
source
clinical
detailed source
Human
ENA accession
SRR1646118 www.ebi.ac.uk
rMLST database accession
112443
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
7 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
127
total length
4,676,805 bp
max length
244,394 bp
mean length
36,826 bp
N50 contig number
20
N50 length (L50)
77,016
N90 contig number
59
N90 length (L90)
27,522
N95 contig number
69
N95 length (L95)
19,227
loci tagged
6,539

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 342 (2 isolates)

Schemes and loci

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Tools

Analysis: