Full information on isolate SRR1646078 (id:10354)

Provenance/primary metadata

id
10354
isolate
SRR1646078
alias
H123060783
subspecies
enterica
serovar
Java
year
2012
source
food
ENA accession
SRR1646078 www.ebi.ac.uk
rMLST database accession
112419
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
15 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
132
total length
4,701,121 bp
max length
245,858 bp
mean length
35,615 bp
N50 contig number
21
N50 length (L50)
71,535
N90 contig number
65
N90 length (L90)
25,316
N95 contig number
76
N95 length (L95)
15,791
loci tagged
6,526

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 185 (9 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 241 (7 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 325 (7 isolates)

Schemes and loci

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Tools

Analysis: