Full information on isolate SRR1645812 (id:10195)

Provenance/primary metadata

id
10195
isolate
SRR1645812
alias
H122740603
subspecies
enterica
serovar
Java
year
2012
source
clinical
detailed source
Human
ENA accession
SRR1645812 www.ebi.ac.uk
rMLST database accession
112260
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
13 updates show details
date entered
2015-05-14
datestamp
2019-12-05

Sequence bin

contigs
220
total length
4,748,437 bp
max length
230,769 bp
mean length
21,584 bp
N50 contig number
32
N50 length (L50)
45,923
N90 contig number
103
N90 length (L90)
14,913
N95 contig number
124
N95 length (L95)
8,831
loci tagged
6,476

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: