Full information on isolate ERR023402 (id:1004)

Provenance/primary metadata

id
1004
isolate
ERR023402
subspecies
enterica
serovar
Paratyphi BIII
ENA accession
ERR235127 www.ebi.ac.uk
rMLST database accession
34894
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
11 updates show details
date entered
2014-11-21
datestamp
2016-09-20

Sequence bin

contigs
241
total length
4,592,082 bp
max length
147,537 bp
mean length
19,055 bp
N50 contig number
42
N50 length (L50)
35,332
N90 contig number
130
N90 length (L90)
9,897
N95 contig number
158
N95 length (L95)
7,025
loci tagged
6,485

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 140 (2 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 187 (2 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 249 (2 isolates)

Schemes and loci

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Tools

Analysis: