Full information on isolate SRR1645346 (id:10003)

Provenance/primary metadata

id
10003
isolate
SRR1645346
alias
H123020550
subspecies
enterica
serovar
Java
year
2012
source
clinical
detailed source
Human
ENA accession
SRR1645346 www.ebi.ac.uk
rMLST database accession
112068
sender
Maddi Pearce, University of Oxford, UK
curator
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update history
9 updates show details
date entered
2015-05-14
datestamp
2016-09-21

Sequence bin

contigs
196
total length
4,844,974 bp
max length
194,939 bp
mean length
24,720 bp
N50 contig number
26
N50 length (L50)
54,004
N90 contig number
85
N90 length (L90)
17,816
N95 contig number
102
N95 length (L95)
10,597
loci tagged
6,490

Show sequence bin

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 1 (54 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 195 (25 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 258 (24 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 350 (22 isolates)

Schemes and loci

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Tools

Analysis: