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Full information on isolate P125109 (id:10)

Provenance/meta data

id
10
isolate
P125109
aliases
AM933172; NC_011294; PRJEA30687; PRJNA59247
subspecies
enterica
serovar
Enteritidis
country
UK
continent
Europe
source
clinical
detailed source
Outbreak of food-poisoning from poultry farm
ENA accession
AM933172 www.ebi.ac.uk
rMLST database accession
79
sender
Maddi Pearce, University of Oxford, UK
curator
Auto Tagger
update history
11 updates show details
date entered
2014-11-11
datestamp
2018-12-05

Publication (1)

  • Thomson NR, Clayton DJ, Windhorst D, Vernikos G, Davidson S, Churcher C, Quail MA, Stevens M, Jones MA, Watson M, Barron A, Layton A, Pickard D, Kingsley RA, Bignell A, Clark L, Harris B, Ormond D, Abdellah Z, Brooks K, Cherevach I, Chillingworth T, Woodward J, Norberczak H, Lord A, Arrowsmith C, Jagels K, Moule S, Mungall K, Sanders M, Whitehead S, Chabalgoity JA, Maskell D, Humphrey T, Roberts M, Barrow PA, Dougan G, Parkhill J (2008). Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Res 18:1624-37

Sequence bin

contigs
1
length
4685848 bp
loci tagged
6,595
detailed breakdown
Display

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Salm_cgc_200SalmcgMLST v1.0Single-linkage200experimentalgroup: 9 (2864 isolates)
Salm_cgc_100SalmcgMLST v1.0Single-linkage100experimentalgroup: 10 (1216 isolates)
Salm_cgc_50SalmcgMLST v1.0Single-linkage50experimentalgroup: 10 (1210 isolates)
Salm_cgc_25SalmcgMLST v1.0Single-linkage25experimentalgroup: 10 (943 isolates)

Schemes and loci

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