Full information on isolate NETGBS_D25677 (id:993)
Provenance/primary metadata
- id
- 993
- isolate
- NETGBS_D25677
- alias
- G001
- country
- Malawi
- continent
- Africa
- year
- 2004
- age yr
- 0
- age months
- 0
- age days
- 14
- sex
- male
- disease
- bacteraemia
- source
- blood
- capsular serotype
- III
- capsular genotype
- III
- bioproject accession
- PRJEB8986 www.ebi.ac.uk
- biosample accession
- SAMEA3317615 www.ebi.ac.uk
- ENA run accession
- ERR840677 www.ebi.ac.uk
- sender
- Yo Nishihara, University of Malawi
- curator
- Odile Harrison, University of Oxford, UK (E-mail: odile.harrison@ndph.ox.ac.uk)
- update history
- 39 updates show details
- date entered
- 2015-03-26
- datestamp
- 2021-07-23
Publication (1)
- Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:
Sequence bin
- contigs
- 64
- total length
- 2,017,828 bp
- max length
- 236,123 bp
- mean length
- 31,529 bp
- N50
- 126,609
- L50
- 6
- N90
- 31,734
- L90
- 18
- N95
- 18,488
- L95
- 23
- %GC
- 35.34
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,783
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| h_S.agalactiae cgMLST v1.0 | 1405 | 1367 | 97 | |
Schemes and loci
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