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Full information on isolate NETGBS_STREPCAR_40 (id:986)

Provenance/primary metadata

id
986
isolate
NETGBS_STREPCAR_40
alias
40
country
Malawi
continent
Africa
year
2008
sex
female
disease
carrier
source
rectovaginal swab
capsular serotype
Ia
capsular genotype
Ia
bioproject accession
PRJEB8986 www.ebi.ac.uk
biosample accession
SAMEA3317607 www.ebi.ac.uk
ENA run accession
ERR840670 www.ebi.ac.uk
sender
Yo Nishihara, University of Malawi
curator
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update history
35 updates show details
date entered
2015-03-26
datestamp
2021-12-22

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
23
total length
1,974,513 bp
max length
604,653 bp
mean length
85,849 bp
N50
383,712
L50
2
N90
63,737
L90
10
N95
54,078
L95
12
%GC
35.20
Ns
0
gaps
0
loci tagged
1,747

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405137898

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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