Full information on isolate NETGBS_STREPCAR_1622 (id:981)

Provenance/primary metadata

id
981
isolate
NETGBS_STREPCAR_1622
alias
1622
country
Malawi
continent
Africa
year
2010
sex
female
disease
carrier
source
rectovaginal swab
capsular serotype
Ia
capsular genotype
Ia
bioproject accession
PRJEB8986 www.ebi.ac.uk
biosample accession
SAMEA3317602 www.ebi.ac.uk
ENA run accession
ERR840665 www.ebi.ac.uk
sender
Yo Nishihara, University of Malawi
curator
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update history
35 updates show details
date entered
2015-03-26
datestamp
2021-12-22

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
21
total length
1,979,392 bp
max length
384,432 bp
mean length
94,257 bp
N50
310,941
L50
3
N90
66,626
L90
10
N95
63,726
L95
11
%GC
35.26
Ns
0
gaps
0
loci tagged
1,747

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405137998

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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