Full information on isolate NETGBS_STREPCAR_1615 (id:979)
Provenance/primary metadata
- id
- 979
- isolate
- NETGBS_STREPCAR_1615
- alias
- 1615
- country
- Malawi
- continent
- Africa
- year
- 2010
- sex
- female
- disease
- carrier
- source
- rectovaginal swab
- capsular serotype
- V
- capsular genotype
- V
- bioproject accession
- PRJEB8986 www.ebi.ac.uk
- biosample accession
- SAMEA3317600 www.ebi.ac.uk
- ENA run accession
- ERR840663 www.ebi.ac.uk
- sender
- Yo Nishihara, University of Malawi
- curator
- Odile Harrison, University of Oxford, UK (E-mail: odile.harrison@ndph.ox.ac.uk)
- update history
- 35 updates show details
- date entered
- 2015-03-26
- datestamp
- 2022-02-21
Publication (1)
- Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:
Sequence bin
- contigs
- 584
- total length
- 2,269,337 bp
- max length
- 71,050 bp
- mean length
- 3,886 bp
- N50
- 14,861
- L50
- 45
- N90
- 2,385
- L90
- 182
- N95
- 597
- L95
- 269
- %GC
- 35.26
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,693
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 52 | 98 | |
| h_S.agalactiae cgMLST v1.0 | 1405 | 1291 | 91 | |
Schemes and loci
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