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Full information on isolate NETGBS_STREPCAR_15 (id:976)

Provenance/primary metadata

id
976
isolate
NETGBS_STREPCAR_15
alias
15
country
Malawi
continent
Africa
year
2008
sex
female
disease
carrier
source
rectovaginal swab
capsular serotype
Ia
capsular genotype
Ia
bioproject accession
PRJEB8986 www.ebi.ac.uk
biosample accession
SAMEA3317597 www.ebi.ac.uk
ENA run accession
ERR840660 www.ebi.ac.uk
sender
Yo Nishihara, University of Malawi
curator
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update history
36 updates show details
date entered
2015-03-26
datestamp
2021-12-22

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
24
total length
2,027,640 bp
max length
384,528 bp
mean length
84,485 bp
N50
176,235
L50
4
N90
63,738
L90
12
N95
63,483
L95
13
%GC
35.26
Ns
0
gaps
0
loci tagged
1,766

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405137998

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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