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Full information on isolate NETGBS_STREPCAR_1586 (id:975)

Provenance/primary metadata

id
975
isolate
NETGBS_STREPCAR_1586
alias
1586
country
Malawi
continent
Africa
year
2010
sex
female
disease
carrier
source
rectovaginal swab
capsular serotype
Ia
capsular genotype
Ia
bioproject accession
PRJEB8986 www.ebi.ac.uk
biosample accession
SAMEA3317596 www.ebi.ac.uk
ENA run accession
ERR840659 www.ebi.ac.uk
sender
Yo Nishihara, University of Malawi
curator
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update history
37 updates show details
date entered
2015-03-26
datestamp
2021-12-22

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
33
total length
2,022,477 bp
max length
538,438 bp
mean length
61,288 bp
N50
122,330
L50
3
N90
53,955
L90
14
N95
32,286
L95
16
%GC
35.22
Ns
0
gaps
0
loci tagged
1,753

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405137898

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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