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Full information on isolate ILRI005 (id:763)

Provenance/primary metadata

id
763
isolate
ILRI005
country
Kenya
continent
Africa
year
2004
source
other animal
sender
Joerg Jores, International Livestock Research institute, PO Box 30709, 00100 Nairobi, Kenya
curator
Odile Harrison, University of Oxford, UK (E-mail: odile.harrison@zoo.ox.ac.uk)
update history
11 updates show details
date entered
2012-12-17
datestamp
2022-02-21

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
1
length
2,109,759 bp
%GC
35.43
Ns
0
gaps
0
loci tagged
1,658

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405134195

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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