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Full information on isolate MRI Z1-218 (id:711)

Provenance/primary metadata

id
711
isolate
MRI Z1-218
alias
1035
country
Italy
continent
Europe
region
north
year
2005
source
cows milk
sender
Ruth Zadoks, Moredun Research Institute
curator
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update history
15 updates show details
date entered
2012-07-29
datestamp
2022-02-22

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
25
total length
2,093,520 bp
max length
358,450 bp
mean length
83,741 bp
N50
162,903
L50
4
N90
41,072
L90
14
N95
23,219
L95
18
%GC
35.21
Ns
0
gaps
0
loci tagged
1,771

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405138198

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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