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Full information on isolate MRI Z1-215 (id:710)

Provenance/primary metadata

id
710
isolate
MRI Z1-215
alias
766
country
Italy
continent
Europe
region
South
year
2004
source
cows milk
sender
Ruth Zadoks, Moredun Research Institute
curator
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update history
18 updates show details
date entered
2012-07-29
datestamp
2020-09-25

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
28
total length
2,141,124 bp
max length
376,352 bp
mean length
76,469 bp
N50
124,658
L50
4
N90
59,541
L90
14
N95
53,081
L95
16
%GC
35.29
Ns
0
gaps
0
loci tagged
1,728

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405136697

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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