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Full information on isolate MRI Z1-213 (id:709)

Provenance/primary metadata

id
709
isolate
MRI Z1-213
alias
481
country
Italy
continent
Europe
region
North
year
2004
source
cows milk
sender
Ruth Zadoks, Moredun Research Institute
curator
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update history
19 updates show details
date entered
2012-07-29
datestamp
2022-08-22

Publication (1)

  • Gori A, Harrison OB, Mlia E, Nishihara Y, Chan JM, Msefula J, Mallewa M, Dube Q, Swarthout TD, Nobbs AH, Maiden MCJ, French N, Heyderman RS (2020). Pan-GWAS of Streptococcus agalactiae Highlights Lineage-Specific Genes Associated with Virulence and Niche Adaptation. mBio 11:

Sequence bin

contigs
86
total length
2,346,409 bp
max length
118,813 bp
mean length
27,284 bp
N50
52,563
L50
16
N90
15,539
L90
49
N95
7,220
L95
60
%GC
35.65
Ns
58
gaps
6
loci tagged
1,731

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
h_S.agalactiae cgMLST v1.01405135096

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Streptococcus agalactiae Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus agalactiae 100%

Analysis performed: 2023-03-15

Schemes and loci

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