Full information on isolate R-16 (id:268)

Provenance/primary metadata

id
268
isolate
R-16
country
China
continent
Asia
region
Shandong
year
2021
source
meninges
epidemiology
epidemic
sender
xihui zhu, liaocheng university
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
2 updates show details
date entered
2022-07-21
datestamp
2022-07-21

Sequence bin

contigs
105
total length
2,224,677 bp
max length
262,986 bp
mean length
21,188 bp
N50
103,405
L50
8
N90
28,561
L90
22
N95
11,310
L95
29
%GC
34.89
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Riemerella anatipestifer Bacteroidetes > Flavobacteriia > Flavobacteriales > Weeksellaceae > Riemerella > Riemerella anatipestifer 100%

Analysis performed: 2022-07-21

Schemes and loci

MLST

dnaB
6  S 
groEL
6  S 
gyrA
15  S 
mdh
26  S 
gluD
8  S 
gpi
15  S 
rpoB
18  S 
ST
96
clonal complex
Not defined

Tools

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