Full information on isolate R-21 (id:258)

Provenance/primary metadata

id
258
isolate
R-21
country
China
continent
Asia
region
Guangdong
year
2021
disease
meningtis
source
meninges
epidemiology
epidemic
sender
xihui zhu, liaocheng university
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
2 updates show details
date entered
2022-06-27
datestamp
2022-06-27

Sequence bin

contigs
46
total length
2,221,387 bp
max length
718,701 bp
mean length
48,292 bp
N50
407,809
L50
2
N90
66,392
L90
10
N95
20,708
L95
14
%GC
34.94
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Riemerella anatipestifer Bacteroidetes > Flavobacteriia > Flavobacteriales > Weeksellaceae > Riemerella > Riemerella anatipestifer 100%

Analysis performed: 2022-06-27

Schemes and loci

MLST

dnaB
1  S 
groEL
2  S 
gyrA
4  S 
mdh
3  S 
gluD
29  S 
gpi
1  S 
rpoB
11  S 
ST
94
clonal complex
Not defined

Tools

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