Full information on isolate R-17 (id:257)

Provenance/primary metadata

id
257
isolate
R-17
country
China
continent
Asia
region
Shandong
year
2021
disease
meningtis
source
meninges
epidemiology
epidemic
sender
xihui zhu, liaocheng university
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
2 updates show details
date entered
2022-06-27
datestamp
2022-06-27

Sequence bin

contigs
38
total length
2,266,635 bp
max length
326,034 bp
mean length
59,649 bp
N50
151,029
L50
6
N90
50,440
L90
15
N95
35,045
L95
18
%GC
35.08
Ns
97
gaps
1
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Riemerella anatipestifer Bacteroidetes > Flavobacteriia > Flavobacteriales > Weeksellaceae > Riemerella > Riemerella anatipestifer 100%

Analysis performed: 2022-06-27

Schemes and loci

MLST

dnaB
24  S 
groEL
1  S 
gyrA
18  S 
mdh
54  S 
gluD
2  S 
gpi
24  S 
rpoB
6  S 
ST
93
clonal complex
Not defined

Tools

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