Full information on isolate R-3 (id:253)

Provenance/primary metadata

id
253
isolate
R-3
country
China
continent
Asia
region
Shandong
year
2021
disease
meningtis
source
meninges
epidemiology
epidemic
sender
xihui zhu, liaocheng university
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
3 updates show details
date entered
2022-06-27
datestamp
2022-06-27

Sequence bin

contigs
85
total length
2,204,856 bp
max length
262,401 bp
mean length
25,940 bp
N50
103,185
L50
8
N90
28,345
L90
22
N95
11,260
L95
28
%GC
34.92
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Riemerella anatipestifer Bacteroidetes > Flavobacteriia > Flavobacteriales > Weeksellaceae > Riemerella > Riemerella anatipestifer 100%

Analysis performed: 2022-06-27

Schemes and loci

MLST

dnaB
6  S 
groEL
6  S 
gyrA
15  S 
mdh
26  S 
gluD
8  S 
gpi
15  S 
rpoB
18  S 
ST
96
clonal complex
Not defined

Tools

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