Full information on isolate R-2 (id:252)

Provenance/primary metadata

id
252
isolate
R-2
country
China
continent
Asia
region
Hebei
year
2021
disease
meningtis
source
meninges
epidemiology
epidemic
sender
xihui zhu, liaocheng university
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
2 updates show details
date entered
2022-06-27
datestamp
2022-06-27

Sequence bin

contigs
229
total length
2,274,254 bp
max length
92,864 bp
mean length
9,932 bp
N50
22,336
L50
30
N90
6,290
L90
104
N95
3,942
L95
126
%GC
34.86
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Riemerella anatipestifer Bacteroidetes > Flavobacteriia > Flavobacteriales > Weeksellaceae > Riemerella > Riemerella anatipestifer 100%

Analysis performed: 2022-06-27

Schemes and loci

MLST

dnaB
3  S 
groEL
29  S 
gyrA
6  S 
mdh
4  S 
gluD
29  S 
gpi
6  S 
rpoB
17  S 
ST
91
clonal complex
Not defined

Tools

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