Full information on isolate R-1 (id:251)

Provenance/primary metadata

id
251
isolate
R-1
country
China
continent
Asia
region
Shandong
year
2021
disease
meningtis
source
meninges
epidemiology
epidemic
sender
xihui zhu, liaocheng university
curator
Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@biology.ox.ac.uk)
update history
2 updates show details
date entered
2022-06-27
datestamp
2022-06-27

Sequence bin

contigs
30
total length
2,164,809 bp
max length
665,053 bp
mean length
72,161 bp
N50
209,364
L50
3
N90
65,987
L90
10
N95
46,901
L95
12
%GC
34.95
Ns
0
gaps
0
loci tagged
7

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Riemerella anatipestifer Bacteroidetes > Flavobacteriia > Flavobacteriales > Weeksellaceae > Riemerella > Riemerella anatipestifer 100%

Analysis performed: 2022-06-27

Schemes and loci

MLST

dnaB
2  S 
groEL
1  S 
gyrA
1  S 
mdh
1  S 
gluD
1  S 
gpi
2  S 
rpoB
7  S 
ST
4
clonal complex
Not defined

Tools

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