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Full information on isolate 19120509 (id:1619)

Provenance/primary metadata

id: 1619
isolate: 19120509
country: Australia
continent: Oceania
year: 2017
host: porcine
sender: Alec Truswell, Murdoch University
curator: Pat Blackall, QAAFI, The University of Queensland (E-mail: p.blackall@uq.edu.au)
update history: 3 updates show details
date entered: 2021-01-06
datestamp: 2021-02-05

Sequence bin

contigs: 130
total length: 2,355,859 bp
max length: 509,356 bp
mean length: 18,122 bp
N50: 196,372
L50: 4
N90: 41,484
L90: 17
N95: 15,417
L95: 23
%GC: 40.27
Ns: 0
gaps: 0
loci tagged: 13

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 2 S

^mharoA: 1 S

^mhdeoD: 40 S

^mhgdhA: 1 S

^mhg6pd (zwf): 1 S

^mhmdh: 1 S

^mhpgi: 1 S

ST: 165

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 7 S

^RIRDCest: 11 S

^RIRDCpmi: 9 S

^RIRDCzwf: 10 S

^RIRDCmdh: 47

^RIRDCgdh: 7 S

^RIRDCpgi: 8 S

ST: 383

clonal complex: ST13

Tools

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