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Full information on isolate 19120483 (id:1617)

Provenance/primary metadata

id: 1617
isolate: 19120483
country: Australia
continent: Oceania
year: 2016
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 106
total length: 2,357,518 bp
max length: 380,853 bp
mean length: 22,241 bp
N50: 172,886
L50: 5
N90: 41,695
L90: 16
N95: 10,530
L95: 21
%GC: 40.20
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 2 S

^mharoA: 64 S

^mhdeoD: 1 S

^mhgdhA: 1 S

^mhg6pd (zwf): 1 S

^mhmdh: 1 S

^mhpgi: 1 S

ST: 163

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 7

^RIRDCest: 11

^RIRDCpmi: 9

^RIRDCzwf: 10

^RIRDCmdh: 4

^RIRDCgdh: 7

^RIRDCpgi: 8

ST: 13

clonal complex: ST13

Tools

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