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Full information on isolate 19120481 (id:1616)

Provenance/primary metadata

id: 1616
isolate: 19120481
country: Australia
continent: Oceania
year: 2016
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 105
total length: 2,394,177 bp
max length: 320,217 bp
mean length: 22,802 bp
N50: 116,886
L50: 6
N90: 30,672
L90: 20
N95: 16,779
L95: 25
%GC: 40.17
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 5 S

^mharoA: 7 S

^mhdeoD: 4 S

^mhgdhA: 29 S

^mhg6pd (zwf): 38 S

^mhmdh: 6 S

^mhpgi: 53 S

ST: 162

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 6

^RIRDCest: 10

^RIRDCpmi: 8

^RIRDCzwf: 9

^RIRDCmdh: 8

^RIRDCgdh: 3

^RIRDCpgi: 8

ST: 12

clonal complex: Not defined

Tools

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