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Full information on isolate 19120465 (id:1615)

Provenance/primary metadata

id: 1615
isolate: 19120465
country: Australia
continent: Oceania
year: 2016
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 2 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 1,661
total length: 2,860,206 bp
max length: 56,745 bp
mean length: 1,722 bp
N50: 6,448
L50: 127
N90: 512
L90: 693
N95: 344
L95: 1,042
%GC: 40.24
Ns: 0
gaps: 0
loci tagged: 11

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA

^mhdeoD: 5 S

^mhgdhA: 3 S

^mhg6pd (zwf): 5 S

^mhmdh: 7 S

^mhpgi: 5 S

ST: Not defined

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2 S

^RIRDCest: 7 S

^RIRDCpmi

^RIRDCzwf: 6 S

^RIRDCmdh

^RIRDCgdh: 5 S

^RIRDCpgi: 7 S

ST: Not defined

clonal complex: Not defined

Tools

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