Home>Organisms>Pasteurella multocida>Pasteurella multocida isolates>Isolate information

Full information on isolate 19120464 (id:1614)

Provenance/primary metadata

id: 1614
isolate: 19120464
country: Australia
continent: Oceania
year: 2016
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 82
total length: 2,267,518 bp
max length: 415,238 bp
mean length: 27,653 bp
N50: 149,004
L50: 5
N90: 56,686
L90: 14
N95: 31,502
L95: 16
%GC: 40.36
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 37 S

^mhdeoD: 5 S

^mhgdhA: 3 S

^mhg6pd (zwf): 5 S

^mhmdh: 7 S

^mhpgi: 5 S

ST: 161

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2

^RIRDCest: 7

^RIRDCpmi: 16

^RIRDCzwf: 6

^RIRDCmdh: 4

^RIRDCgdh: 5

^RIRDCpgi: 7

ST: 24

clonal complex: ST9

Tools

Export:

Analysis: