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Full information on isolate 19120454 (id:1613)

Provenance/primary metadata

id: 1613
isolate: 19120454
country: Australia
continent: Oceania
year: 2016
host: porcine
sender: Alec Truswell, Murdoch University
curator: Pat Blackall, QAAFI, The University of Queensland (E-mail: p.blackall@uq.edu.au)
update history: 3 updates show details
date entered: 2021-01-06
datestamp: 2021-02-05

Sequence bin

contigs: 39
total length: 2,291,182 bp
max length: 610,509 bp
mean length: 58,749 bp
N50: 566,780
L50: 2
N90: 107,928
L90: 7
N95: 58,896
L95: 9
%GC: 40.26
Ns: 0
gaps: 0
loci tagged: 13

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 10 S

^mharoA: 59 S

^mhdeoD: 4 S

^mhgdhA: 43 S

^mhg6pd (zwf): 46 S

^mhmdh: 38 S

^mhpgi: 4 S

ST: 160

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 4 S

^RIRDCest: 42 S

^RIRDCpmi: 16 S

^RIRDCzwf: 8 S

^RIRDCmdh: 46

^RIRDCgdh: 47 S

^RIRDCpgi: 31 S

ST: 382

clonal complex: Not defined

Tools

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