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Full information on isolate 19120444 (id:1611)

Provenance/primary metadata

id: 1611
isolate: 19120444
country: Australia
continent: Oceania
year: 2015
host: porcine
sender: Alec Truswell, Murdoch University
curator: Pat Blackall, QAAFI, The University of Queensland (E-mail: p.blackall@uq.edu.au)
update history: 3 updates show details
date entered: 2021-01-06
datestamp: 2021-02-05

Sequence bin

contigs: 212
total length: 2,400,944 bp
max length: 407,723 bp
mean length: 11,326 bp
N50: 116,883
L50: 6
N90: 35,998
L90: 17
N95: 8,287
L95: 23
%GC: 40.04
Ns: 0
gaps: 0
loci tagged: 13

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 44 S

^mharoA: 7 S

^mhdeoD: 4 S

^mhgdhA: 5 S

^mhg6pd (zwf): 44 S

^mhmdh: 6 S

^mhpgi: 3 S

ST: 158

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 59

^RIRDCest: 10 S

^RIRDCpmi: 20 S

^RIRDCzwf: 43 S

^RIRDCmdh: 8 S

^RIRDCgdh: 3 S

^RIRDCpgi: 20 S

ST: 381

clonal complex: ST50

Tools

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