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Full information on isolate 19120439 (id:1610)

Provenance/primary metadata

id: 1610
isolate: 19120439
country: Australia
continent: Oceania
year: 2015
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 83
total length: 2,421,359 bp
max length: 615,955 bp
mean length: 29,173 bp
N50: 161,019
L50: 4
N90: 58,634
L90: 13
N95: 16,899
L95: 18
%GC: 40.33
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 59 S

^mhdeoD: 4 S

^mhgdhA: 12 S

^mhg6pd (zwf): 32 S

^mhmdh: 5 S

^mhpgi: 51 S

ST: 157

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2

^RIRDCest: 9

^RIRDCpmi: 7

^RIRDCzwf: 8

^RIRDCmdh: 7

^RIRDCgdh: 3

^RIRDCpgi: 9

ST: 11

clonal complex: Not defined

Tools

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