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Full information on isolate 19120438 (id:1609)

Provenance/primary metadata

id: 1609
isolate: 19120438
country: Australia
continent: Oceania
year: 2015
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 59
total length: 2,294,621 bp
max length: 568,166 bp
mean length: 38,892 bp
N50: 190,249
L50: 4
N90: 59,695
L90: 13
N95: 24,524
L95: 15
%GC: 40.28
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 10 S

^mharoA: 9 S

^mhdeoD: 3 S

^mhgdhA: 43 S

^mhg6pd (zwf): 45 S

^mhmdh: 36 S

^mhpgi: 35 S

ST: 156

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 4

^RIRDCest: 77

^RIRDCpmi: 64

^RIRDCzwf: 68

^RIRDCmdh: 14

^RIRDCgdh: 47

^RIRDCpgi: 41

ST: 265

clonal complex: Not defined

Tools

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