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Full information on isolate 19120426 (id:1608)

Provenance/primary metadata

id: 1608
isolate: 19120426
country: Australia
continent: Oceania
year: 2015
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 39
total length: 2,344,102 bp
max length: 369,000 bp
mean length: 60,106 bp
N50: 173,571
L50: 5
N90: 58,376
L90: 14
N95: 54,519
L95: 16
%GC: 40.16
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 5 S

^mharoA: 7 S

^mhdeoD: 41 S

^mhgdhA: 29 S

^mhg6pd (zwf): 38 S

^mhmdh: 6 S

^mhpgi: 53 S

ST: 155

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 6

^RIRDCest: 10

^RIRDCpmi: 8

^RIRDCzwf: 9

^RIRDCmdh: 8

^RIRDCgdh: 3

^RIRDCpgi: 8

ST: 12

clonal complex: Not defined

Tools

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