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Full information on isolate 19120407 (id:1605)

Provenance/primary metadata

id: 1605
isolate: 19120407
country: Australia
continent: Oceania
year: 2015
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 49
total length: 2,328,681 bp
max length: 615,785 bp
mean length: 47,525 bp
N50: 146,842
L50: 5
N90: 65,718
L90: 14
N95: 34,512
L95: 16
%GC: 40.22
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 4 S

^mharoA: 4 S

^mhdeoD: 4 S

^mhgdhA: 5 S

^mhg6pd (zwf): 43 S

^mhmdh: 6 S

^mhpgi: 4 S

ST: 152

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 22

^RIRDCest: 13

^RIRDCpmi: 8

^RIRDCzwf: 51

^RIRDCmdh: 8

^RIRDCgdh: 3

^RIRDCpgi: 31

ST: 379

clonal complex: ST74

Tools

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