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Full information on isolate 19120382 (id:1604)

Provenance/primary metadata

id: 1604
isolate: 19120382
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 49
total length: 2,280,144 bp
max length: 342,641 bp
mean length: 46,534 bp
N50: 145,744
L50: 5
N90: 66,165
L90: 14
N95: 52,745
L95: 16
%GC: 40.34
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 5 S

^mhdeoD: 29 S

^mhgdhA: 3 S

^mhg6pd (zwf): 5 S

^mhmdh: 7 S

^mhpgi: 5 S

ST: 151

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2

^RIRDCest: 7

^RIRDCpmi: 5

^RIRDCzwf: 6

^RIRDCmdh: 4

^RIRDCgdh: 5

^RIRDCpgi: 7

ST: 9

clonal complex: ST9

Tools

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