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Full information on isolate 19120378 (id:1603)

Provenance/primary metadata

id: 1603
isolate: 19120378
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 3 updates show details
date entered: 2021-01-06
datestamp: 2021-04-03

Sequence bin

contigs: 137
total length: 2,307,999 bp
max length: 129,889 bp
mean length: 16,847 bp
N50: 53,254
L50: 14
N90: 14,603
L90: 46
N95: 8,399
L95: 56
%GC: 40.25
Ns: 0
gaps: 0
loci tagged: 14

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 59 S

^mhdeoD: 4 S

^mhgdhA: 42 S

^mhg6pd (zwf): 38 S

^mhmdh: 5 S

^mhpgi: 1 S

ST: 150

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2 S

^RIRDCest: 17 S

^RIRDCpmi: 7 S

^RIRDCzwf: 9 S

^RIRDCmdh: 7 S

^RIRDCgdh: 62 S

^RIRDCpgi: 8 S

ST: 387

clonal complex: ST124

Tools

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