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Full information on isolate 19120358 (id:1602)

Provenance/primary metadata

id: 1602
isolate: 19120358
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 86
total length: 2,367,010 bp
max length: 403,631 bp
mean length: 27,524 bp
N50: 108,015
L50: 7
N90: 34,317
L90: 20
N95: 8,883
L95: 26
%GC: 40.15
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Pseudomonadota > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2023-03-23

Schemes and loci

Multi host MLST

^mhadk: 7 S

^mharoA: 7 S

^mhdeoD: 4 S

^mhgdhA: 41 S

^mhg6pd (zwf): 7 S

^mhmdh: 6 S

^mhpgi: 3 S

ST: 149

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 14

^RIRDCest: 10

^RIRDCpmi: 20

^RIRDCzwf: 19

^RIRDCmdh: 8

^RIRDCgdh: 28

^RIRDCpgi: 20

ST: 167

clonal complex: ST50

Tools

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