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Full information on isolate 19120347 (id:1601)

Provenance/primary metadata

id: 1601
isolate: 19120347
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 52
total length: 2,304,811 bp
max length: 317,332 bp
mean length: 44,324 bp
N50: 194,392
L50: 5
N90: 70,837
L90: 13
N95: 56,512
L95: 15
%GC: 40.23
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 59 S

^mhdeoD: 4 S

^mhgdhA: 12 S

^mhg6pd (zwf): 38 S

^mhmdh: 5 S

^mhpgi: 1 S

ST: 148

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2

^RIRDCest: 17

^RIRDCpmi: 7

^RIRDCzwf: 9

^RIRDCmdh: 7

^RIRDCgdh: 3

^RIRDCpgi: 8

ST: 124

clonal complex: Not defined

Tools

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