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Full information on isolate 19120341 (id:1600)

Provenance/primary metadata

id: 1600
isolate: 19120341
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 60
total length: 2,229,492 bp
max length: 329,411 bp
mean length: 37,159 bp
N50: 192,480
L50: 5
N90: 66,503
L90: 12
N95: 26,051
L95: 15
%GC: 40.40
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 9 S

^mhdeoD: 29 S

^mhgdhA: 39 S

^mhg6pd (zwf): 9 S

^mhmdh: 5 S

^mhpgi: 7 S

ST: 147

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2

^RIRDCest: 6

^RIRDCpmi: 4

^RIRDCzwf: 4

^RIRDCmdh: 6

^RIRDCgdh: 4

^RIRDCpgi: 6

ST: 7

clonal complex: Not defined

Tools

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