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Full information on isolate 19120340 (id:1599)

Provenance/primary metadata

id: 1599
isolate: 19120340
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 9 updates show details
date entered: 2021-01-06
datestamp: 2021-01-07

Sequence bin

contigs: 70
total length: 2,349,798 bp
max length: 405,782 bp
mean length: 33,569 bp
N50: 160,901
L50: 5
N90: 56,464
L90: 16
N95: 34,498
L95: 18
%GC: 40.14
Ns: 0
gaps: 0
loci tagged: 7

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 7 S

^mharoA: 7 S

^mhdeoD: 4 S

^mhgdhA: 5 S

^mhg6pd (zwf): 44 S

^mhmdh: 6 S

^mhpgi: 3 S

ST: 146

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 14

^RIRDCest: 10

^RIRDCpmi: 20

^RIRDCzwf: 43

^RIRDCmdh: 8

^RIRDCgdh: 3

^RIRDCpgi: 20

ST: 151

clonal complex: ST50

Tools

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