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Full information on isolate 19120332 (id:1597)

Provenance/primary metadata

id: 1597
isolate: 19120332
country: Australia
continent: Oceania
year: 2014
host: porcine
sender: Alec Truswell, Murdoch University
curator: Auto Tagger
update history: 4 updates show details
date entered: 2021-01-06
datestamp: 2021-04-03

Sequence bin

contigs: 29
total length: 2,204,912 bp
max length: 328,469 bp
mean length: 76,032 bp
N50: 239,281
L50: 4
N90: 70,429
L90: 12
N95: 66,503
L95: 13
%GC: 40.31
Ns: 0
gaps: 0
loci tagged: 14

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 8 S

^mharoA: 9 S

^mhdeoD: 29 S

^mhgdhA: 12 S

^mhg6pd (zwf): 42 S

^mhmdh: 5 S

^mhpgi: 1 S

ST: 144

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 2 S

^RIRDCest: 6 S

^RIRDCpmi: 7 S

^RIRDCzwf: 80 S

^RIRDCmdh: 6 S

^RIRDCgdh: 3 S

^RIRDCpgi: 8 S

ST: 386

clonal complex: ST124

Tools

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