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Full information on isolate Pasteurella Multocia (id:1596)

Provenance/primary metadata

id: 1596
isolate: Pasteurella Multocia
country: Bangladesh
continent: Asia
host: avian
disease: fowl cholera
source: nasopharyngeal swab
capsular type: A
toxA gene presence: absent
sender: Ajran Kabir, Bangladesh Agricultural University
curator: Auto Tagger
update history: 2 updates show details
date entered: 2020-11-08
datestamp: 2021-01-07

Sequence bin

contigs: 46
total length: 2,343,872 bp
max length: 599,279 bp
mean length: 50,954 bp
N50: 229,570
L50: 4
N90: 68,525
L90: 11
N95: 63,174
L95: 12
%GC: 40.22
Ns: 0
gaps: 0
loci tagged: 13

Show sequence bin

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Pasteurella multocida	Proteobacteria > Gammaproteobacteria > Pasteurellales > Pasteurellaceae > Pasteurella > Pasteurella multocida	100%

Analysis performed: 2022-12-07

Schemes and loci

Multi host MLST

^mhadk: 3 S

^mharoA: 42 S

^mhdeoD: 7 S

^mhgdhA: 7 S

^mhg6pd (zwf): 15 S

^mhmdh: 10 S

^mhpgi

ST: Not defined

clonal complex: Not defined

RIRDC MLST

^RIRDCadk: 21 S

^RIRDCest: 33 S

^RIRDCpmi: 26 S

^RIRDCzwf: 2 S

^RIRDCmdh: 17 S

^RIRDCgdh: 20 S

^RIRDCpgi: 35 S

ST: 201

clonal complex: ST129

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