Full information on isolate 0091/93 (id:991)
Provenance/primary metadata
- id
- 991
- isolate
- 0091/93
- strain designation
- B: P1.5-1,2-2: F1-7: ST-112 (cc41/44)
- country
- Czech Republic
- continent
- Europe
- region
- OC
- year
- 1993
- age yr
- 21
- age range
- 15-24
- sex
- male
- disease
- carrier
- source
- throat swab
- epidemiology
- carrier
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- serotype
- 15
- sero subtype
- P1.5,2,12
Antimicrobial resistance
- cefotaxime mic
- =0.004 μg/mL
- cefotaxime SIR
- S
- penicillin mic
- =0.008 μg/mL
- penicillin SIR
- S
- rifampicin mic
- =0.008 μg/mL
- rifampicin SIR
- S
- sulphonamide mic
- =4 μg/mL
Tracking
- bioproject accession
- PRJEB2090 www.ebi.ac.uk
- biosample accession
- SAMEA1402016; ERS094674 www.ebi.ac.uk
- ENA run accession
- ERR133734 www.ebi.ac.uk
- sender
- Pavla Křížová, Pavla Křížová and Keith Jolley
- curator
- James Bray, University of Oxford, UK (E-mail: james.bray@biology.ox.ac.uk)
- update history
- 121 updates show details
- date entered
- 2007-03-29
- datestamp
- 2023-06-07
Secondary metadata
Deduced vaccine reactivity
- Bexsero reactivity
- insufficient data notes
- Trumenba reactivity
- cross-reactive notes
- Trumenba notes
- fHbp_peptide: 19 is cross-reactive to vaccine variant - data derived from MEASURE assays (PMID:29535195), and SBA assays (PMID:22569484, PMID:22718089, PMID:22871351, PMID:23114369, PMID:23352429, PMID:26407272, PMID:26707218, PMID:26803328, PMID:26835974, PMID:26974889, PMID:27745812, PMID:27846061, PMID:28196734, PMID:28566335, PMID:29236639)
Publications (5)
Sequence bin
- contigs
- 181
- total length
- 2,117,925 bp
- max length
- 142,250 bp
- mean length
- 11,702 bp
- N50
- 44,627
- L50
- 17
- N90
- 9,268
- L90
- 52
- N95
- 4,255
- L95
- 68
- %GC
- 51.73
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,171
Annotation quality metrics
Provenance information
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v2 | 1422 | 1413 | 99 |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3992 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (3399 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (3077 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1193 (557 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v2 | Single-linkage | 200 | experimental | 89 (2 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3992 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (3399 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (3077 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1193 (557 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 2094 (1 isolate) |
Nm_cgc_200 | N. meningitidis cgMLST v2 | Single-linkage | 200 | experimental | 89 (2 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v2 | Single-linkage | 100 | experimental | 136 (1 isolate) |
Nm_cgc_50 | N. meningitidis cgMLST v2 | Single-linkage | 50 | experimental | 151 (1 isolate) |
Nm_cgc_25 | N. meningitidis cgMLST v2 | Single-linkage | 25 | experimental | 155 (1 isolate) |
Nm_cgc_10 | N. meningitidis cgMLST v2 | Single-linkage | 10 | experimental | 163 (1 isolate) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
Tools
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