Full information on isolate 0091/93 (id:991)
Provenance/primary metadata
- id
- 991
- isolate
- 0091/93
- strain designation
- B: P1.5-1,2-2: F1-7: ST-112 (cc41/44)
- country
- Czech Republic
- continent
- Europe
- region
- OC
- year
- 1993
- age yr
- 21
- age range
- 15-24
- sex
- male
- disease
- carrier
- source
- throat swab
- epidemiology
- carrier
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- serotype
- 15
- sero subtype
- P1.5,2,12
Antimicrobial resistance
- cefotaxime mic
- =0.004 μg/mL
- cefotaxime SIR
- S
- penicillin mic
- =0.008 μg/mL
- penicillin SIR
- S
- rifampicin mic
- =0.008 μg/mL
- rifampicin SIR
- S
- sulphonamide mic
- =4 μg/mL
Tracking
- ENA run accession
- ERR133734 www.ebi.ac.uk
- sender
- Pavla Křížová, Pavla Křížová and Keith Jolley
- curator
- Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@zoo.ox.ac.uk)
- update history
- 113 updates show details
- date entered
- 2007-03-29
- datestamp
- 2021-06-18
Secondary metadata
Vaccines
- Bexsero reactivity
- insufficient data
notes - Trumenba reactivity
- cross-reactive
notes - Trumenba notes
- fHbp_peptide: 19 is cross-reactive to vaccine variant - data derived from MEASURE assays (PMID:29535195), and SBA assays (PMID:22569484, PMID:22718089, PMID:22871351, PMID:23114369, PMID:23352429, PMID:26407272, PMID:26707218, PMID:26803328, PMID:26835974, PMID:26974889, PMID:27745812, PMID:27846061, PMID:28196734, PMID:28566335, PMID:29236639)
Publications (4)
- Bennett JS, Jolley KA, Sparling PF, Saunders NJ, Hart CA, Feavers IM, Maiden MC (2007). Species status of Neisseria gonorrhoeae: evolutionary and epidemiological inferences from multilocus sequence typing. BMC Biol 5:35
- Buckee CO, Jolley KA, Recker M, Penman B, Kriz P, Gupta S, Maiden MC (2008). Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc Natl Acad Sci U S A 105:15082-7
- Jolley KA, Kalmusova J, Feil EJ, Gupta S, Musilek M, Kriz P, Maiden MC (2000). Carried meningococci in the Czech Republic: a diverse recombining population. J Clin Microbiol 38:4492-8
- Jolley KA, Wilson DJ, Kriz P, McVean G, Maiden MC (2005). The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis. Mol Biol Evol 22:562-9
Sequence bin
- contigs
- 181
- total length
- 2,117,925 bp
- max length
- 142,250 bp
- mean length
- 11,702 bp
- N50
- 44,627
- L50
- 17
- N90
- 9,268
- L90
- 52
- N95
- 4,255
- L95
- 68
- %GC
- 51.73
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,170
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v1.0 | 1605 | 1565 | 97 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Neisseria meningitidis | Proteobacteria > Betaproteobacteria > Neisseriales > Neisseriaceae > Neisseria > Neisseria meningitidis | 100% |
Analysis performed: 2021-04-30
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (2884 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (2564 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1193 (426 isolates) |
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (2884 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (2564 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1193 (426 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 2094 (1 isolate) |
Nm_cgc_200 | N. meningitidis cgMLST v1.0 | Single-linkage | 200 | experimental | 36 (1 isolate) |
Nm_cgc_100 | N. meningitidis cgMLST v1.0 | Single-linkage | 100 | experimental | 53 (1 isolate) |
Nm_cgc_50 | N. meningitidis cgMLST v1.0 | Single-linkage | 50 | experimental | 61 (1 isolate) |
Nm_cgc_25 | N. meningitidis cgMLST v1.0 | Single-linkage | 25 | experimental | 61 (1 isolate) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
Tools
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