Full information on isolate M-101/93 (id:648)
Projects
Provenance/primary metadata
- id
- 648
- isolate
- M-101/93
- strain designation
- B: P1.7-2,4: F1-5: ST-41 (cc41/44)
- aliases
- NIBSC_2739; Z6421
- country
- Iceland
- continent
- Europe
- year
- 1993
- disease
- invasive (unspecified/other)
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- comments
- Reference Collection
Tracking
- biosample accession
- ERS006925 www.ebi.ac.uk
- sender
- Dominique Caugant, National Institute of Public Health, Oslo, Norway
- curator
- Auto Tagger
- update history
- 157 updates show details
- date entered
- 2001-02-07
- datestamp
- 2022-04-16
Secondary metadata
Vaccines
- Bexsero reactivity
- exact match
notes - Bexsero notes
- NHBA_peptide: 2 is exact match to vaccine variant - peptide sequence match (PMID:27521232);
PorA_VR2: 4 is exact match to vaccine variant - peptide sequence match (PMID:27521232) - Trumenba reactivity
- cross-reactive
notes - Trumenba notes
- fHbp_peptide: 4 is cross-reactive to vaccine variant - data derived from MEASURE assays (PMID:29535195), and SBA assays (PMID:27846061, PMID:29236639)
Publications (8)
Sequence bin
- contigs
- 433
- total length
- 2,140,588 bp
- max length
- 54,910 bp
- mean length
- 4,944 bp
- N50
- 16,908
- L50
- 41
- N90
- 3,466
- L90
- 145
- N95
- 1,749
- L95
- 186
- %GC
- 51.65
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,251
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v1.0 | 1605 | 1535 | 95 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Neisseria meningitidis | Proteobacteria > Betaproteobacteria > Neisseriales > Neisseriaceae > Neisseria > Neisseria meningitidis | 100% |
Analysis performed: 2021-03-31
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (2884 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (2564 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1173 (1499 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 1665 (1141 isolates) |
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (2884 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (2564 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1173 (1499 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 1665 (1141 isolates) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
Tools
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