Full information on isolate 400 (id:646)
Projects
Provenance/primary metadata
- id
- 646
- isolate
- 400
- strain designation
- B: P1.7-2,13-2: F1-5: ST-40 (cc41/44)
- aliases
- NIBSC_2755; Z6419
- country
- Austria
- continent
- Europe
- year
- 1991
- disease
- invasive (unspecified/other)
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- comments
- Reference Collection
Tracking
- biosample accession
- ERS006931 www.ebi.ac.uk
- sender
- Dominique Caugant, National Institute of Public Health, Oslo, Norway
- curator
- Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@zoo.ox.ac.uk)
- update history
- 142 updates show details
- date entered
- 2001-02-07
- datestamp
- 2021-06-18
Secondary metadata
Vaccines
- Bexsero reactivity
- exact match
notes - Bexsero notes
- NHBA_peptide: 2 is exact match to vaccine variant - peptide sequence match (PMID:27521232)
- Trumenba reactivity
- cross-reactive
notes - Trumenba notes
- fHbp_peptide: 14 is cross-reactive to vaccine variant - data derived from MEASURE assays (PMID:29535195), and SBA assays (PMID:22569484, PMID:22718089, PMID:27846061, PMID:28196734, PMID:29236639)
Publications (7)
Sequence bin
- contigs
- 327
- total length
- 2,120,654 bp
- max length
- 105,386 bp
- mean length
- 6,486 bp
- N50
- 25,497
- L50
- 27
- N90
- 5,454
- L90
- 87
- N95
- 2,707
- L95
- 113
- %GC
- 51.59
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,198
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v1.0 | 1605 | 1565 | 97 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Neisseria meningitidis | Proteobacteria > Betaproteobacteria > Neisseriales > Neisseriaceae > Neisseria > Neisseria meningitidis | 100% |
Analysis performed: 2021-03-31
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (2884 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (2564 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1173 (1499 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 1665 (1141 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v1.0 | Single-linkage | 200 | experimental | 123 (1345 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v1.0 | Single-linkage | 100 | experimental | 3363 (48 isolates) |
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 799 (2884 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 921 (2564 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 1173 (1499 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 1665 (1141 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v1.0 | Single-linkage | 200 | experimental | 123 (1345 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v1.0 | Single-linkage | 100 | experimental | 3363 (48 isolates) |
Nm_cgc_50 | N. meningitidis cgMLST v1.0 | Single-linkage | 50 | experimental | 37 (1 isolate) |
Nm_cgc_25 | N. meningitidis cgMLST v1.0 | Single-linkage | 25 | experimental | 37 (1 isolate) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
Tools
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