Full information on isolate BM95a (id:1058)
Provenance/primary metadata
- id
- 1058
- isolate
- BM95a
- strain designation
- B: P1.7-2,13: F1-88: ST-187 ()
- alias
- GR-BM-95a_strC
- country
- Greece
- continent
- Europe
- region
- Athens
- year
- 1998
- age yr
- 27
- age range
- 25-44
- sex
- male
- disease
- carrier
- source
- throat swab
- epidemiology
- carrier
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- serotype
- 15
- sero subtype
- P1.13
- comments
- MLEE: ET-S
Tracking
- ENA run accession
- ERR522809 www.ebi.ac.uk
- sender
- Georgina Tzanakaki, National Meningococcal Reference Laboratory, National School of Public Health, Athens, Greece
- curator
- Keith Jolley, University of Oxford, UK (E-mail: keith.jolley@zoo.ox.ac.uk)
- update history
- 137 updates show details
- date entered
- 2001-02-07
- datestamp
- 2021-06-18
Secondary metadata
Sequence bin
- contigs
- 182
- total length
- 2,173,667 bp
- max length
- 127,832 bp
- mean length
- 11,944 bp
- N50
- 45,792
- L50
- 17
- N90
- 10,599
- L90
- 54
- N95
- 5,840
- L95
- 67
- %GC
- 51.53
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,196
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v1.0 | 1605 | 1575 | 98 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Neisseria meningitidis | Proteobacteria > Betaproteobacteria > Neisseriales > Neisseriaceae > Neisseria > Neisseria meningitidis | 100% |
Analysis performed: 2021-03-31
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 4661 (6 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 5401 (6 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 6641 (5 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 9400 (3 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v1.0 | Single-linkage | 200 | experimental | 42 (3 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v1.0 | Single-linkage | 100 | experimental | 59 (3 isolates) |
Nm_cgc_50 | N. meningitidis cgMLST v1.0 | Single-linkage | 50 | experimental | 67 (3 isolates) |
Nm_cgc_25 | N. meningitidis cgMLST v1.0 | Single-linkage | 25 | experimental | 67 (3 isolates) |
Bact_rmlstc_20 | Ribosomal MLST | Single-linkage | 20 | experimental | 169 (25037 isolates) |
Bact_rmlstc_10 | Ribosomal MLST | Single-linkage | 10 | experimental | 476 (3700 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3392 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 4661 (6 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 5401 (6 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 6641 (5 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 9400 (3 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v1.0 | Single-linkage | 200 | experimental | 42 (3 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v1.0 | Single-linkage | 100 | experimental | 59 (3 isolates) |
Nm_cgc_50 | N. meningitidis cgMLST v1.0 | Single-linkage | 50 | experimental | 67 (3 isolates) |
Nm_cgc_25 | N. meningitidis cgMLST v1.0 | Single-linkage | 25 | experimental | 67 (3 isolates) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
Tools
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Analysis: