Full information on isolate M (id:5)

Provenance/primary metadata

id
5
isolate
M
aliases
CP000854; NC_010612; PRJNA16725; PRJNA59423
country
USA
continent
North America
species
Mycobacterium marinum
year
1992
genome status
finished
data source
NCBI reference
ENA accession
CP000854 www.ebi.ac.uk
rMLST database accession
135
comments
preiously named M. balnei
sender
Sofia Hauck
curator
Sofia Hauck, University of Oxford, UK (E-mail: sofia.hauck@zoo.ox.ac.uk)
update history
32 updates show details
date entered
2014-12-12
datestamp
2017-08-16

Publication (1)

  • Stinear TP, Seemann T, Harrison PF, Jenkin GA, Davies JK, Johnson PD, Abdellah Z, Arrowsmith C, Chillingworth T, Churcher C, Clarke K, Cronin A, Davis P, Goodhead I, Holroyd N, Jagels K, Lord A, Moule S, Mungall K, Norbertczak H, Quail MA, Rabbinowitsch E, Walker D, White B, Whitehead S, Small PL, Brosch R, Ramakrishnan L, Fischbach MA, Parkhill J, Cole ST (2008). Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. Genome Res 18:729-41

Sequence bin

contigs
1
length
6,636,827 bp
%GC
65.73
Ns
0
gaps
0
loci tagged
1,129

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycobacterium marinum Actinomycetota > Actinomycetes > Corynebacteriales > Mycobacteriaceae > Mycobacterium > Mycobacterium marinum 61%
SPECIES Mycobacterium liflandii Actinomycetota > Actinomycetes > Corynebacteriales > Mycobacteriaceae > Mycobacterium > Mycobacterium liflandii 13%

Analysis performed: 2023-02-14

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: