Full information on isolate 02_1987 (id:25)
Provenance/primary metadata
- id
- 25
- isolate
- 02_1987
- aliases
- ABLM01; GCA_000155165.1; PRJNA29167; PRJNA55097; SAMN02595225
- species
- Mycobacterium tuberculosis
- genome status
- draft
- data source
- NCBI assembly
- rMLST database accession
- 1031
- sender
- Sofia Hauck, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 66 updates show details
- date entered
- 2014-12-12
- datestamp
- 2022-09-08
Sequence bin
- contigs
- 213
- total length
- 4,442,716 bp
- max length
- 252,625 bp
- mean length
- 20,858 bp
- N50
- 83,475
- L50
- 18
- N90
- 20,290
- L90
- 60
- N95
- 7,753
- L95
- 75
- %GC
- 65.32
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,666
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| 19sp-cgMLST_200A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 200 | experimental | 1 (6865 isolates) |
| 19sp-cgMLST_160A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 160 | experimental | 1 (6762 isolates) |
| 19sp-cgMLST_120A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 120 | experimental | 1 (6178 isolates) |
| 19sp-cgMLST_90A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 90 | experimental | 3 (5257 isolates) |
| 19sp-cgMLST_60A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 60 | experimental | 5 (154 isolates) |
| 19sp-cgMLST_75A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 75 | experimental | 8 (1479 isolates) |
| 19sp-cgMLST_200A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 200 | experimental | 1 (6865 isolates) |
| 19sp-cgMLST_160A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 160 | experimental | 1 (6762 isolates) |
| 19sp-cgMLST_120A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 120 | experimental | 1 (6178 isolates) |
| 19sp-cgMLST_90A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 90 | experimental | 3 (5257 isolates) |
| 19sp-cgMLST_60A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 60 | experimental | 5 (154 isolates) |
| 19sp-cgMLST_75A | Core genome (H37Rv ref vs 19 finished species) | Single-linkage | 75 | experimental | 8 (1479 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: