Full information on isolate H37Rv (id:13)

Provenance/primary metadata

id
13
isolate
H37Rv
aliases
AL123456; NC_000962; PRJNA224; PRJNA57777
country
UK
continent
Europe
species
Mycobacterium tuberculosis
year
1905
genome status
finished
data source
NCBI reference
ENA accession
AL123456 www.ebi.ac.uk
rMLST database accession
143
comments
L4; H37 isolated from human in 1905, H37Rv derived from that strain in 1934
sender
Sofia Hauck, University of Oxford, UK
curator
Auto Tagger
update history
48 updates show details
date entered
2014-12-12
datestamp
2022-09-08

Publication (1)

  • Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE, Tekaia F, Badcock K, Basham D, Brown D, Chillingworth T, Connor R, Davies R, Devlin K, Feltwell T, Gentles S, Hamlin N, Holroyd S, Hornsby T, Jagels K, Krogh A, McLean J, Moule S, Murphy L, Oliver K, Osborne J, Quail MA, Rajandream MA, Rogers J, Rutter S, Seeger K, Skelton J, Squares R, Squares S, Sulston JE, Taylor K, Whitehead S, Barrell BG (1998). Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393:537-44

Sequence bin

contigs
1
length
4,411,532 bp
%GC
65.61
Ns
0
gaps
0
loci tagged
4,000

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Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycobacterium tuberculosis Actinomycetota > Actinomycetes > Corynebacteriales > Mycobacteriaceae > Mycobacterium > Mycobacterium tuberculosis 100%

Analysis performed: 2023-03-15

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
19sp-cgMLST_200ACore genome (H37Rv ref vs 19 finished species)Single-linkage200experimental1 (6865 isolates)
19sp-cgMLST_160ACore genome (H37Rv ref vs 19 finished species)Single-linkage160experimental1 (6762 isolates)
19sp-cgMLST_120ACore genome (H37Rv ref vs 19 finished species)Single-linkage120experimental1 (6178 isolates)
19sp-cgMLST_90ACore genome (H37Rv ref vs 19 finished species)Single-linkage90experimental3 (5257 isolates)
19sp-cgMLST_60ACore genome (H37Rv ref vs 19 finished species)Single-linkage60experimental13 (3578 isolates)
19sp-cgMLST_75ACore genome (H37Rv ref vs 19 finished species)Single-linkage75experimental2 (3763 isolates)
19sp-cgMLST_200ACore genome (H37Rv ref vs 19 finished species)Single-linkage200experimental1 (6865 isolates)
19sp-cgMLST_160ACore genome (H37Rv ref vs 19 finished species)Single-linkage160experimental1 (6762 isolates)
19sp-cgMLST_120ACore genome (H37Rv ref vs 19 finished species)Single-linkage120experimental1 (6178 isolates)
19sp-cgMLST_90ACore genome (H37Rv ref vs 19 finished species)Single-linkage90experimental3 (5257 isolates)
19sp-cgMLST_60ACore genome (H37Rv ref vs 19 finished species)Single-linkage60experimental13 (3578 isolates)
19sp-cgMLST_75ACore genome (H37Rv ref vs 19 finished species)Single-linkage75experimental2 (3763 isolates)

Schemes and loci

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