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Full information on isolate F11 (id:11)

Provenance/primary metadata

id
11
isolate
F11
aliases
CP000717; NC_009565; PRJNA15642; PRJNA58417
country
South Africa
continent
Africa
species
Mycobacterium tuberculosis
genome status
finished
data source
NCBI reference
ENA accession
CP000717 www.ebi.ac.uk
rMLST database accession
141
comments
epidemic strain
sender
Sofia Hauck, University of Oxford, UK
curator
Auto Tagger
update history
166 updates show details
date entered
2014-12-12
datestamp
2022-09-08

Sequence bin

contigs
1
length
4,424,435 bp
%GC
65.62
Ns
0
gaps
0
loci tagged
3,846

Show sequence bin

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Mycobacterium tuberculosis Actinomycetota > Actinomycetes > Corynebacteriales > Mycobacteriaceae > Mycobacterium > Mycobacterium tuberculosis 100%

Analysis performed: 2023-03-10

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
19sp-cgMLST_200ACore genome (H37Rv ref vs 19 finished species)Single-linkage200experimental1 (6865 isolates)
19sp-cgMLST_160ACore genome (H37Rv ref vs 19 finished species)Single-linkage160experimental1 (6762 isolates)
19sp-cgMLST_120ACore genome (H37Rv ref vs 19 finished species)Single-linkage120experimental1 (6178 isolates)
19sp-cgMLST_90ACore genome (H37Rv ref vs 19 finished species)Single-linkage90experimental3 (5257 isolates)
19sp-cgMLST_60ACore genome (H37Rv ref vs 19 finished species)Single-linkage60experimental13 (3578 isolates)
19sp-cgMLST_75ACore genome (H37Rv ref vs 19 finished species)Single-linkage75experimental2 (3763 isolates)
19sp-cgMLST_200ACore genome (H37Rv ref vs 19 finished species)Single-linkage200experimental1 (6865 isolates)
19sp-cgMLST_160ACore genome (H37Rv ref vs 19 finished species)Single-linkage160experimental1 (6762 isolates)
19sp-cgMLST_120ACore genome (H37Rv ref vs 19 finished species)Single-linkage120experimental1 (6178 isolates)
19sp-cgMLST_90ACore genome (H37Rv ref vs 19 finished species)Single-linkage90experimental3 (5257 isolates)
19sp-cgMLST_60ACore genome (H37Rv ref vs 19 finished species)Single-linkage60experimental13 (3578 isolates)
19sp-cgMLST_75ACore genome (H37Rv ref vs 19 finished species)Single-linkage75experimental2 (3763 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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